DOI:

10.37988/1811-153X_2026_1_14

Microbiota as a prognostic predictor of the risk of peri-implantitis development in patients with chronic periodontitis

Authors

  • I.V. Bazhutova 1, PhD in Medical sciences, associate professor of the Stomatology Department
    ORCID: 0000-0003-3200-5538
  • A.V. Lyamin 1, Doctor of Science in Medicine, associate professor, director of the Center for Genetic and Laboratory Technologies
    ORCID: 0000-0002-5905-1895
  • D.A. Trunin 1, Doctor of Science in Medicine, full professor, head of the Stomatology Department
    ORCID: 0000-0002-7221-7976
  • K.A. Kaiumov 1, specialist of the Culturomics and proteomics research Lab at the Center for Genetic and Laboratory Technologies
    ORCID: 0000-0002-9614-7255
  • A.E. Ponomarev 1, biologist of the Immunological Research Methods Lab at the Center for Genetic and Laboratory Technologies
    ORCID: 0009-0003-9759-9944
  • I.A. Shirokov 1, specialist of the BigData analysis Lab at the Center for Genetic and Laboratory Technologies
    ORCID: 0009-0002-9397-7138
  • N.V. Volov 2, PhD in Medical Sciences, chief medical officer
    ORCID: 0000-0002-2942-5665
  • D.G. Glubokov 3, head of the pathoanatomical department
    ORCID: 0009-0000-7232-554X
  • 1 Samara State Medical University, 443099, Samara, Russia
  • 2 Otolaryngology Clinic “Ambulatory Center No. 1”, 443008, Samara, Russia
  • 3 Municipal clinical hospital no. 8, 443035, Samara, Russia

Abstract

Development of inflammation at the site of the installed implant, with the development of peri-implantitis and mucositis are much more common in patients with chronic periodontal diseases. The study is aimed at developing a model for predicting the risk of peri-implantitis in patients with chronic periodontitis using microbiological markers and the CART algorithm. Objective: to develop a model for classifying the risk of peri-implantitis in patients with chronic periodontitis based on microbiological markers using the decision tree method.
Materials and methods.
The study analyzed 177 patients with chronic periodontitis, divided into three groups: without dental implants, and implants without signs of peri-implantitis and with the presence of these signs (59 people in each group). An analysis of microbiological indicators was carried out, which allowed us to identify microbiological markers of the risk of peri-implantitis. A machine learning model was built based on the CART algorithm with the inclusion of the Gini index.
Results.
For the total sample, the model demonstrated the following metrics: overall correctness — 0.667, consistency — 0.639, ROC—AUC — 0.66. Statistically significant differences in microbiological parameters were revealed in patients with peri-implantitis. The most typical microorganisms were Rothia mucilaginosa, Actinomyces odontolyticus, Staphylococcus epidermidis, Streptococcus australis, Streptococcus oralis. These results are consistent with the literature data.
Conclusions.
Microbiological analysis of patients with peri-implantitis, including statistical data processing and the use of machine learning methods, allows us to predict the risk of peri-implantitis in patients with chronic periodontitis. The results emphasize the importance of including repeat microbiological examination in standard examination protocols, which allow for early identification of at-risk patients and personalization of preventive and therapeutic measures.

Key words:

periimplantitis, chronic periodontitis, microbiological markers, forecasting, dental implantation, machine learning

For Citation

[1]
Bazhutova I.V., Lyamin A.V., Trunin D.A., Kaiumov K.A., Ponomarev A.E., Shirokov I.A., Volov N.V., Glubokov D.G. Microbiota as a prognostic predictor of the risk of peri-implantitis development in patients with chronic periodontitis. Clinical Dentistry (Russia).  2026; 29 (1): 14—21. DOI: 10.37988/1811-153X_2026_1_14

References

  1. Robitaille N., Reed D.N., Walters J.D., Kumar P.S. Periodontal and peri-implant diseases: identical or fraternal infections? —Mol Oral Microbiol. 2016; 31 (4): 285—301. PMID: 26255984
  2. Yakupov B.A., Gulyaeva O.A., Averyanov S.V., Lakman I.A. Prevention of periimplantitis in the field of dental implants in patients with a history of generalized periodontitis. The Dental Institute. 2024; 2 (103): 39—41 (In Russian). eLIBRARY ID: 68366247
  3. Schwarz F., Derks J., Monje A., Wang H.L. Peri-implantitis. J Periodontol. 2018; 89 Suppl 1: S267—S290. PMID: 29926957
  4. Mombelli A., Müller N., Cionca N. The epidemiology of peri-implantitis. Clin Oral Implants Res. 2012; 23 Suppl 6: 67—76. PMID: 23062130
  5. Tsarev V.N., Nikolaeva E.N., Ippolitov E.V. Periodontophatogenic bacteria of the main factors of emergence and development of periodontitis. Journal of Microbiology, Epidemiology and Immunobiology. 2017; 5: 101—112 (In Russian). eLIBRARY ID: 32628890
  6. Romanova R.O., Zyulkina L.A., Ivanov P.V., Kuryaev I.I., Kashlevskaya M.E. Modern aspects of etiopathogenesis inflammatory periodontal diseases (review). Medical Newsletter of Vyatka. 2022; 1 (73): 96—102 (In Russian). eLIBRARY ID: 48112443
  7. Rafiei M., Kiani F., Sayehmiri K., Sayehmiri F., Tavirani M., Dousti M., Sheikhi A. Prevalence of anaerobic bacteria (Porphyromonas gingivalis) as major microbial agent in the incidence periodontal diseases by meta-analysis. J Dent (Shiraz). 2018; 19 (3): 232—242. PMID: 30175194
  8. Li X., Liu Y., Yang X., Li C., Song Z. The oral microbiota: Community composition, influencing factors, pathogenesis, and interventions. Front Microbiol. 2022; 13: 895537. PMID: 35572634
  9. Yeh H.C., Lu J.J., Chang S.C., Ge M.C. Identification of microbiota in peri-implantitis pockets by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Sci Rep. 2019; 9 (1): 774. PMID: 30692557
  10. Di Spirito F., Giordano F., Di Palo M.P., D’Ambrosio F., Scognamiglio B., Sangiovanni G., Caggiano M., Gasparro R. Microbiota of peri-implant healthy tissues, peri-implant mucositis, and peri-implantitis: A comprehensive review. Microorganisms. 2024; 12 (6): 1137. PMID: 38930519
  11. Trunin D.A., Tlustenko V.P., Komlev S.S., Tlustenko V.S., Khomenko I.N., Lyamin A.V. Evaluation of the species diversity of microflora isolated from the epithelium of the oral mucosa in patients using removable orthopedic structures based on dental implants. Stomatology. 2021; 5: 43—47 (In Russian). eLIBRARY ID: 47152092
  12. Iușan S.A.L., Lucaciu O.P., Petrescu N.B., Mirică I.C., Toc D.A., Albu S., Costache C. The main bacterial communities identified in the sites affected by periimplantitis: A systematic review. Microorganisms. 2022; 10 (6): 1232. PMID: 35744750
  13. Bornes R., Montero J., Correia A., Marques T., Rosa N. Peri-implant diseases diagnosis, prognosis and dental implant monitoring: a narrative review of novel strategies and clinical impact. BMC Oral Health. 2023; 23 (1): 183. PMID: 36997949
  14. Rajasekar A., Varghese S.S. Microbiological profile in periodontitis and peri-implantitis: A systematic review. J Long Term Eff Med Implants. 2022; 32 (4): 83—94. PMID: 36017930
  15. Kim H.J., Ahn D.H., Yu Y., Han H., Kim S.Y., Joo J.Y., Chung J., Na H.S., Lee J.Y. Microbial profiling of peri-implantitis compared to the periodontal microbiota in health and disease using 16S rRNA sequencing. J Periodontal Implant Sci. 2023; 53 (1): 69—84. PMID: 36468472
  16. Chun Giok K., Menon R.K. The Microbiome of peri-implantitis: A systematic review of next-generation sequencing studies. Antibiotics (Basel). 2023; 12 (11): 1610. PMID: 37998812
  17. Ancuţa D.L., Alexandru D.M., Crivineanu M., Coman C. Induction of experimental peri-implantitis with strains selected from the human oral microbiome. Biomedicines. 2024; 12 (4): 715. PMID: 38672071
  18. Petrini M., Giuliani A., Di Campli E., Di Lodovico S., Iezzi G., Piattelli A., D’Ercole S. The bacterial anti-adhesive activity of double-etched titanium (DAE) as a dental implant surface. Int J Mol Sci. 2020; 21 (21): 8315. PMID: 33167597
  19. Bessa L.J., Egas C., Pires C., Proença L., Mascarenhas P., Pais R.J., Barroso H., Machado V., Botelho J., Alcoforado G., Mendes J.J., Alves R. Linking peri-implantitis to microbiome changes in affected implants, healthy implants, and saliva: a cross-sectional pilot study. Front Cell Infect Microbiol. 2025; 15: 1543100. PMID: 40313461
  20. Fragkioudakis I., Konstantopoulos G., Kottaridi C., Doufexi A.E., Sakellari D. Quantitative assessment of Candida albicans, Staphylococcus aureus and Staphylococcus epidermidis in peri-implant health and disease: correlation with clinical parameters. J Med Microbiol. 2024; 73 (11): 2024 Nov; 73 (11)…. PMID: 39601508
  21. Bürgers R., Morsczeck C., Felthaus O., Gosau M., Beck H.C., Reichert T.E. Induced surface proteins of Staphylococcus epidermidis adhering to titanium implant substrata. Clin Oral Investig. 2018; 22 (7): 2663—2668. PMID: 29948278

Received

April 29, 2025

Accepted

February 22, 2026

Published on

March 31, 2026